PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100229580171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 347aa    MW: 38283.7 Da    PI: 8.6781
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100229580171genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17109158155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ote100229580171|100229580171 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 158
                                   78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-9109158IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15109168IPR016177DNA-binding domain
CDDcd000183.81E-12110168No hitNo description
SMARTSM003803.7E-31110172IPR001471AP2/ERF domain
PROSITE profilePS5103217.28110166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17110167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
PIPLSXXXXX XXXXXFDLNL TLDSSDGHKL DANNCDGWSR EASPANGGVE SSSSNDDACS  60
RRAAASALNF DRGEPAAFSS PRVAVQQEVQ QVQVVQARKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TALAAARAYD RAAIKFRGVE ADINFNHSDY DDMKPMMNLS  180
KEEFVQALRK QSNVFSRGSC KYRAQNPGIK AYDKGAIMCN GETTLEPRYD KSQHDLNLNL  240
GMPASARSPK ESGWLDSLKL HLGSSASNGG VPVRSRHPSL NPQFVPNNEE RETSASQLEV  300
GNLGERVHGH YQTAANSTAA SSRFSSEETA RNTLASYPWI NPYLPPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089376.16e-65PREDICTED: ethylene-responsive transcription factor RAP2-7-like
TrEMBLA0A0D2QCY82e-60A0A0D2QCY8_G
STRINGPOPTR_0008s04490.15e-53(Populus trichocarpa)